Congratulations to the team working on AP32 (the Human Proteome Browser), who now have discoverable descriptions for the software tool that is being developed and the input datasets that their tool is intended to act upon (neXtProt, PeptideAtlas, the GPM and the Human Protein Atlas), incorporated into Research Data Australia (RDA):
These RDA descriptions will allow the tool and datasets to be discovered by others around the world by using Google and other common search engines.
For the technically minded, the underlying conceptual RIF-CS modelling for this system (showing the service, data collection and party objects and the relationships between them) is shown here:
NOTE however, that the above information model includes some components that are not yet fully functional (such as the software system itself which is still under development), and it also describes some intended output collections that as yet, can't actually be created as the software tool required to make them is not yet functional.
Therefore, only a subset of these descriptions of the system components have currently been published in RDA. These point to tangible existing objects (or in the case of the software tool, a RIF-CS service description explaining its current 'non-functional' status):
The full complement of descriptions will be described in RDA when the fully functional software system is deployed towards the end of the project.
Sunday, 3 June 2012
ANDS Applications Project Blogs
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Final Product Post - 1. Introductory Product Information The web services developed as part of this project have been extensions to product known as the Biocache. This tool is u...6 months ago
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AURIN Training Update - Between the 1st and 3rd of May over 35 participants representing 15 partners agencies took part in a training and information session on the AURIN portal a...1 week ago
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What does the application do? The bigger picture - Although cancers may look the same under the microscope, they behave quite differently at the genomic level. By identifying these genetic differences, res...2 months ago
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Where have you been all this time? - Yes it's true! We have been quiet of late. It has been a busy few months buried in code, but it is finally here, a new release of the CATAMI site. So what ...4 days ago
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New domain registration – www.terranova.org.au - We have found our domain and branding! The project team and the project board decided that Terra Nova, or New Land, typified what we were trying to achieve...5 months ago
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Multiple observation types reduce uncertainty in Australia’s terrestrial carbon and water cycles by Vanessa Haverd , M. R. Raupach, P R Briggs, J. Canadell , P. R.Isaac, C. Pickett Heaps, S. H Roxburgh, E. van Gorsel, R. Viscarra Rossel and Z. Wang - Information about the carbon cycle potentially constrains the water cycle, and vice versa. Benefitting from the public liberation of the data necessary to ...2 months ago
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Announcing Edgar - Here’s Edgar! tropicaldatahub.org/goto/edgar Edgar is a web based mapping tool looking at Australia’s birds, and climate change. We think Edgar is pretty...8 months ago
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Glossary - Acronym Full Name URL ANDS Australian National Data Service http://www.ands.org.au CONNIE http://www.csiro.au/connie2/ CSIRO The Commonwealth Scientific a...10 months ago
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Final product - The AP11 project (Proteomic-genomic Nexus) has reached end of development and we are happy to announce the proteomic-genomic nexus tools are available fo...3 weeks ago
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The Extreme Weather Events Database has it's own website. - The SWISH project has a second website devoted to the database/analytics server (the EWEDB) http://swish-climate-impact-assessment.github.com From those...5 weeks ago
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Semaphore’s Value - To follow on from the previous post about the future of Semaphore, we take a look at the week’s developments with regard to our next project deliverable: D...1 month ago
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The SEQITOR team - The SEQITOR team is based in CSIRO and brings a mix of skills which will ensure the successful delivery of the project. Sharon Tickell - Software Engineer ...3 months ago
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‘Soils to Satellites’ shines at TERN Symposium - The annual TERN Symposium is an opportunity for anyone and everyone ecologically-inclined to gather in a single location and discover what projects the var...5 weeks ago
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The Proteome Browser - A Software Resource for the Chromosome-Centric Human Proteome Project - The Proteome Browser is a web-based portal to the human proteome developed to support the efforts of the Australian/New Zealand consortium in the Chromoso...2 weeks ago
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Announcing TissueStack - TissueStack was originally designed for use in the 3D medical and scientific imaging field for data from 3D micro-CT, MRI and restacked histology data. Th...5 weeks ago
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